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Does it use the ReplayTV commercial markers, or let you graphicially edit them out yourself? I have found the replay commercial skip to be nice, but not 100%, thus I need to manually edit.

It uses the CS markers, but the file that the evtdump util generates can be edited with a text editor. If that's not sufficient and you need a GUI to do the job, ISTR there was a utility to graphically edit the file and save new commercial markers, but I forget the name.

Yeah, commercial skip is not 100%, but it's close enough for my purposes. Generally, when it misses, it doesn't chop content, it just includes a commercial, and it's not worth my time to fix those mistakes when I archive. If a commercial or two is included, so be it.

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I have no interest in doing this on a Windows PC

RTVTools binaries are included for, I believe, Win32 and i386 Linux. I forget if the source is readily available or not. I use the Linux versions since that's where all my files live.
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- Tony C
my empeg stuff