Here's an exe that will download files off your empeg. For now, you have to figure out the FID using the CSV export from emplode.
I'm still working on refining it, so be prepared for strange behaviour. However, if you use Win9x, I'd greatly appreciate your giving this a spin.

And please don't ask me for source yet either. I'll eventually post it, but i have some big plans for the tool first.

One thing to watch out for: Sometimes it seems like the empeg won't respond for a long time. Just leaving it alone seems to work. Or, you can power-cycle (unplug the power, actually) the unit and restart the download.