Yes, you can I did just such a transfer recently using Roger's (a Empeg employee) Lazy Bastards Guide from his website.

It worked a treat, and bought all, songs,playlist everything across within about 6-8 hours (i.e. overnight).

You have to remember to transfer all files in the /driveX/fids directory and then remove all the files in the directory where config.ini lives - except config.ini! itself.

then reboot and resync with Emplode - voila, everything cloned.
[except EQ settings, play counts etc].

Have search i nthe General forum for "Lazy Bastards guide" to find my original post a week or so ago on the subject which includes a link to Rogers page.