Could be a problem with the plugin too... don't be too fast to point emphatic :-) Keep in mind that the plugin is stilll in developement stage too... And I mainly test the plugin with itself: If it's able to re-read itself, using a "similar" way as emphatic does, I consider it saves the lyrics ok. There could be differences between the plugin's way to understand the SYLT frame and emphatic's way though.
Do you have this problem only with a single file? Does it work for others?
Ah!, and do other people tried to upload timestamped songs to their empeg to see them in emphatic? It's working here, but haven't got any feedback of this from others. Maybe BREmpeg is not the only one...
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Patrick