Okay, Tony. Here's the deal:
Your windoze client is apparently dazed and baffled by the appearance of "." and ".." in the FTP directory listings. Some *nix FTP servers always provide them in the listings, and others only provide them when "ls -a" is used ("-a" == display ALL files, otherwise hide anything beginning with a dot).
Hijack currently shows ALL files by default. I will change the behaviour to hide "dot files" unless "-a" is given. That oughta keep your client software from puking all over itself.
v185, in a few minutes (gotta go make the change first).
Cheers
-ml